About 2 weeks ago, I noticed that I was getting more wind noise
then in the past. I took it to the dealer and of course they said
nothing is wrong that everything is sealed tight. While washing
my car today, I noticed that my front driver side and rear door
don't align like the other side does. Can this cause the wind noise?
Has anyone else noticed this?

 

I don't think the misaligned doors can cause the wind noise since you mentioned that you started noticing that you were getting more wind noise than before about 2 weeks ago. Did something happen to cause the misaligned doors recently?

 

Nothing happened but after going to the dealer and they couldn't
find a wind leak, i decided to inspect my car and i noticed that the
front door was lower then the rear door. I was wondering
if anyone else has noticed that the front door has loosened up
from it's hindges.